If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ), 'gf_id' => 'HOM05D000707', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000707' ), 'data_identifier' => 'HOM05D000707', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000707', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33100' => 'bna', 'A02p37350' => 'bna', 'A03p35400' => 'bna', 'A03p59230' => 'bna', 'A05p00120' => 'bna', 'A05p40560' => 'bna', 'A07p11500' => 'bna', 'A08p25950' => 'bna', 'A09p38100' => 'bna', 'Aa31LG1G29290' => 'aar', 'Aa31LG1G29300' => 'aar', 'Aa31LG5G18230' => 'aar', 'Aa31LG8G8440' => 'aar', 'Aa31LG9G13430' => 'aar', 'Aa31LG9G2170' => 'aar', 'Aa31sc140G40' => 'aar', 'Aa31sc146G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1736' => 'aag', 'Actinidia00690' => 'ach', 'Actinidia09611' => 'ach', 'Actinidia12500' => 'ach', 'Actinidia16022' => 'ach', 'Actinidia18824' => 'ach', 'Actinidia20604' => 'ach', 'Actinidia20618' => 'ach', 'Actinidia22133' => 'ach', 'Actinidia24274' => 'ach', 'Actinidia24710' => 'ach', 'Actinidia30507' => 'ach', 'Actinidia31997' => 'ach', 'Actinidia32080' => 'ach', 'Actinidia32081' => 'ach', 'Actinidia34010' => 'ach', 'Actinidia35195' => 'ach', 'Actinidia37736' => 'ach', 'Ah.01g003670' => 'amhyb', 'Ah.01g014580' => 'amhyb', 'Ah.02g128980' => 'amhyb', 'Ah.03g135770' => 'amhyb', 'Ah.03g138490' => 'amhyb', 'Ah.08g212620' => 'amhyb', 'AL1G41560' => 'aly', 'AL2G27030' => 'aly', 'AL39U10080' => 'aly', 'AL3G19010' => 'aly', 'AL3G36040' => 'aly', 'AL3G36062' => 'aly', 'AL3G36066' => 'aly', 'AL4G29170' => 'aly', 'AL4G47470' => 'aly', 'AL7G40360' => 'aly', 'AL8G20980' => 'aly', 'AL8G20990' => 'aly', 'Aqoxy1G04293' => 'aox', 'Aqoxy2G03098' => 'aox', 'Aqoxy3G01744' => 'aox', 'Aqoxy4G02098' => 'aox', 'Aqoxy4G02103' => 'aox', 'Aqoxy4G02295' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3FT6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5RG53P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A5VUD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98E6B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQXP8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C30NXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EPLW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GAW9KQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2A79V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK4UTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8XRWE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFJ3CW' => 'arhy', 'AT1G28050' => 'ath', 'AT1G68190' => 'ath', 'AT2G33500' => 'ath', 'AT2G47890' => 'ath', 'AT3G07650' => 'ath', 'AT3G21880' => 'ath', 'AT4G15250' => 'ath', 'AT5G48250' => 'ath', 'ATR0053G049' => 'atr', 'ATR0582G038' => 'atr', 'ATR0582G183' => 'atr', 'ATR0743G164' => 'atr', 'ATR0751G075' => 'atr', 'Atru.chr11.2401' => 'acertr', 'Atru.chr11.274' => 'acertr', 'Atru.chr11.275' => 'acertr', 'Atru.chr11.289' => 'acertr', 'Atru.chr5.1261' => 'acertr', 'Atru.chr6.2629' => 'acertr', 'Atru.chr6.3139' => 'acertr', 'Atru.chr6.3432' => 'acertr', 'AUR62002793' => 'cqu', 'AUR62005692' => 'cqu', 'AUR62008578' => 'cqu', 'AUR62014102' => 'cqu', 'AUR62025058' => 'cqu', 'AUR62028867' => 'cqu', 'AUR62034638' => 'cqu', 'AUR62037140' => 'cqu', 'AUR62037849' => 'cqu', 'AUR62041089' => 'cqu', 'BcaB02g08724' => 'bca', 'BcaB03g13961' => 'bca', 'BcaB03g14685' => 'bca', 'BcaB03g14687' => 'bca', 'BcaB03g15405' => 'bca', 'BcaB04g19567' => 'bca', 'BcaB04g20554' => 'bca', 'BcaB04g21277' => 'bca', 'BcaB07g30010' => 'bca', 'BcaB07g30886' => 'bca', 'BcaC02g12537' => 'bca', 'BcaC03g17642' => 'bca', 'BcaC05g26620' => 'bca', 'BcaC05g26808' => 'bca', 'BcaC05g29558' => 'bca', 'BcaC05g29560' => 'bca', 'BcaC06g30815' => 'bca', 'BcaC06g35327' => 'bca', 'BcaC08g45987' => 'bca', 'BcaC09g49124' => 'bca', 'BcaC09g49126' => 'bca', 'BcaC09g49128' => 'bca', 'BcaC09g49130' => 'bca', 'BcaC09g51310' => 'bca', 'BolC1t04188H' => 'bol', 'BolC1t05540H' => 'bol', 'BolC2t11700H' => 'bol', 'BolC3t16571H' => 'bol', 'BolC3t19718H' => 'bol', 'BolC4t21651H' => 'bol', 'BolC5t31396H' => 'bol', 'BolC5t34621H' => 'bol', 'BolC6t38883H' => 'bol', 'BolC7t42240H' => 'bol', 'BolC7t44419H' => 'bol', 'BraA01t03433Z' => 'bra', 'BraA01t04370Z' => 'bra', 'BraA02t08721Z' => 'bra', 'BraA03t12718Z' => 'bra', 'BraA05t19008Z' => 'bra', 'BraA05t22109Z' => 'bra', 'BraA05t22787Z' => 'bra', 'BraA06t26844Z' => 'bra', 'BraA07t28939Z' => 'bra', 'BraA08t34546Z' => 'bra', 'BraA09t39323Z' => 'bra', 'C01p42330' => 'bna', 'C02p56410' => 'bna', 'C03p43030' => 'bna', 'C03p74700' => 'bna', 'C04p00040' => 'bna', 'C05p11470' => 'bna', 'C05p26710' => 'bna', 'C05p41500' => 'bna', 'C05p59670' => 'bna', 'C06p37820' => 'bna', 'C07p17350' => 'bna', 'CAN.G10.10' => 'can', 'CAN.G16.9' => 'can', 'CAN.G294.1' => 'can', 'CAN.G387.2' => 'can', 'CAN.G426.34' => 'can', 'CAN.G80.17' => 'can', 'CAN.G826.5' => 'can', 'CAN.G826.6' => 'can', 'CANSAT01G3194' => 'cansat', 'CANSAT25G1163' => 'cansat', 'CANSAT35G1693' => 'cansat', 'CANSAT64G2714' => 'cansat', 'CANSAT64G2905' => 'cansat', 'CARHR027500' => 'chi', 'CARHR060880' => 'chi', 'CARHR082350' => 'chi', 'CARHR097840' => 'chi', 'CARHR127510' => 'chi', 'CARHR143280' => 'chi', 'CARHR184040' => 'chi', 'CARHR221980' => 'chi', 'Carub.0002s1468' => 'cru', 'Carub.0003s0723' => 'cru', 'Carub.0003s2195' => 'cru', 'Carub.0004s1513' => 'cru', 'Carub.0004s3060' => 'cru', 'Carub.0007s2669' => 'cru', 'Carub.0008s0782' => 'cru', 'Ca_01573_v3' => 'car', 'Ca_05573_v3' => 'car', 'Ca_08115_v3' => 'car', 'Ca_09117_v3' => 'car', 'Ca_11123_v3' => 'car', 'Ca_16335_v3' => 'car', 'Cc01_g20340' => 'ccan', 'Cc05_g01990' => 'ccan', 'Cc05_g05160' => 'ccan', 'Cc11_g09540' => 'ccan', 'Cc11_g17460' => 'ccan', 'CDE02G1405' => 'cde', 'CDE05G2202' => 'cde', 'CDE05G2297' => 'cde', 'CDE06G1024' => 'cde', 'CDE06G2447' => 'cde', 'CDE10G0482' => 'cde', 'CDE10G0913' => 'cde', 'CDE10G1165' => 'cde', 'Cfa009414' => 'cfa', 'Cfa014200' => 'cfa', 'Cfa014441' => 'cfa', 'Ciclev10014969m.g' => 'ccl', 'Ciclev10015305m.g' => 'ccl', 'Ciclev10015364m.g' => 'ccl', 'Ciclev10015595m.g' => 'ccl', 'Ciclev10020545m.g' => 'ccl', 'Ciclev10033431m.g' => 'ccl', 'CiPaw.03G163300' => 'cil', 'CiPaw.03G284000' => 'cil', 'CiPaw.04G118100' => 'cil', 'CiPaw.04G198000' => 'cil', 'CiPaw.05G104100' => 'cil', 'CiPaw.05G243700' => 'cil', 'CiPaw.06G107400' => 'cil', 'CiPaw.07G101200' => 'cil', 'ClCG00G000800' => 'cla', 'ClCG00G001650' => 'cla', 'ClCG02G003050' => 'cla', 'ClCG02G008420' => 'cla', 'ClCG05G022390' => 'cla', 'ClCG07G015280' => 'cla', 'COL.COLO4_06824' => 'col', 'COL.COLO4_12998' => 'col', 'COL.COLO4_13201' => 'col', 'COL.COLO4_13331' => 'col', 'COL.COLO4_19655' => 'col', 'Cpa.g.sc123.53' => 'cpa', 'Cpa.g.sc136.56' => 'cpa', 'Cpa.g.sc65.76' => 'cpa', 'Cpa.g.sc8.239' => 'cpa', 'Cpa.g.sc9.175' => 'cpa', 'CsaV3_2G035220' => 'csa', 'CsaV3_4G002870' => 'csa', 'CsaV3_5G034710' => 'csa', 'CsaV3_6G009750' => 'csa', 'CsaV3_7G002350' => 'csa', 'CSS0006640' => 'camsi', 'CSS0007209' => 'camsi', 'CSS0007579' => 'camsi', 'CSS0013991' => 'camsi', 'CSS0014157' => 'camsi', 'CSS0018755' => 'camsi', 'CSS0038806' => 'camsi', 'CSS0049461' => 'camsi', 'DCAR_002791' => 'dca', 'DCAR_008751' => 'dca', 'DCAR_012422' => 'dca', 'DCAR_012741' => 'dca', 'DCAR_018357' => 'dca', 'DCAR_019663' => 'dca', 'DCAR_019774' => 'dca', 'DCAR_021082' => 'dca', 'DCAR_021189' => 'dca', 'DCAR_024639' => 'dca', 'DCAR_026755' => 'dca', 'Dinv04387' => 'din', 'Dinv05268' => 'din', 'Dinv05325' => 'din', 'Dinv07140' => 'din', 'Dinv18532' => 'din', 'Dinv21323' => 'din', 'Dinv33002' => 'din', 'Dinv33297' => 'din', 'Dinv36816' => 'din', 'Duzib052G0302' => 'dzi', 'Duzib052G0627' => 'dzi', 'Duzib132G0286' => 'dzi', 'Duzib133G0242' => 'dzi', 'Duzib133G0475' => 'dzi', 'Duzib138G1222' => 'dzi', 'Duzib147G1385' => 'dzi', 'Duzib187G0624' => 'dzi', 'Duzib211G0353' => 'dzi', 'Duzib248G0015' => 'dzi', 'Duzib268G0221' => 'dzi', 'ECA233G2961' => 'eca', 'ECA233G4661' => 'eca', 'ECA234G1386' => 'eca', 'ECA236G1365' => 'eca', 'ECA240G4450' => 'eca', 'ECA246G3456' => 'eca', 'ECA247G2474' => 'eca', 'EL10Ac6g13377' => 'bvu', 'EL10Ac6g13579' => 'bvu', 'EL10Ac6g14281' => 'bvu', 'EL10Ac7g17393' => 'bvu', 'EL10Ac9g20662' => 'bvu', 'Eucgr.A01371' => 'egr', 'Eucgr.A01723' => 'egr', 'Eucgr.B02332' => 'egr', 'Eucgr.B02861' => 'egr', 'Eucgr.B03543' => 'egr', 'Eucgr.H01204' => 'egr', 'Eucgr.H03381' => 'egr', 'Eucgr.K01387' => 'egr', 'FAN02G1971' => 'fan', 'FAN02G2049' => 'fan', 'FAN05G0662' => 'fan', 'FAN05G2453' => 'fan', 'FAN07G0571' => 'fan', 'FAN09G1886' => 'fan', 'FAN09G1935' => 'fan', 'FAN12G0817' => 'fan', 'FAN12G1976' => 'fan', 'FAN12G4231' => 'fan', 'FAN14G0029' => 'fan', 'FAN14G0208' => 'fan', 'FAN17G0008' => 'fan', 'FAN20G0483' => 'fan', 'FAN27G0750' => 'fan', 'FvH4_2g24910' => 'fve', 'FvH4_4g23090' => 'fve', 'FvH4_4g26550' => 'fve', 'FvH4_6g40380' => 'fve', 'FvH4_6g43570' => 'fve', 'FvH4_7g05191' => 'fve', 'Glyma.02G152900' => 'gma', 'Glyma.02G223700' => 'gma', 'Glyma.03G209800' => 'gma', 'Glyma.10G021400' => 'gma', 'Glyma.10G269400' => 'gma', 'Glyma.12G196100' => 'gma', 'Glyma.13G009300' => 'gma', 'Glyma.13G306400' => 'gma', 'Glyma.14G190400' => 'gma', 'Glyma.16G050900' => 'gma', 'Glyma.19G099700' => 'gma', 'Glyma.19G207100' => 'gma', 'Glyma.20G060400' => 'gma', 'Glyma.20G121700' => 'gma', 'Gohir.A01G021400' => 'ghi', 'Gohir.A03G151100' => 'ghi', 'Gohir.A03G163400' => 'ghi', 'Gohir.A05G314850' => 'ghi', 'Gohir.A05G314900' => 'ghi', 'Gohir.A05G334900' => 'ghi', 'Gohir.A07G088200' => 'ghi', 'Gohir.A07G163000' => 'ghi', 'Gohir.A07G193400' => 'ghi', 'Gohir.A08G049100' => 'ghi', 'Gohir.A08G116500' => 'ghi', 'Gohir.A11G147600' => 'ghi', 'Gohir.A12G008800' => 'ghi', 'Gohir.A13G059300' => 'ghi', 'Gohir.D01G019800' => 'ghi', 'Gohir.D02G174100' => 'ghi', 'Gohir.D02G186800' => 'ghi', 'Gohir.D05G316200' => 'ghi', 'Gohir.D07G093100' => 'ghi', 'Gohir.D07G170100' => 'ghi', 'Gohir.D07G199600' => 'ghi', 'Gohir.D08G059100' => 'ghi', 'Gohir.D08G137300' => 'ghi', 'Gohir.D11G154500' => 'ghi', 'Gohir.D12G008500' => 'ghi', 'Gohir.D13G062900' => 'ghi', 'Gorai.001G099700' => 'gra', 'Gorai.001G190000' => 'gra', 'Gorai.001G223800' => 'gra', 'Gorai.002G022300' => 'gra', 'Gorai.004G061000' => 'gra', 'Gorai.004G140600' => 'gra', 'Gorai.005G195800' => 'gra', 'Gorai.005G209100' => 'gra', 'Gorai.007G164600' => 'gra', 'Gorai.008G008400' => 'gra', 'Gorai.009G338600' => 'gra', 'Gorai.012G083100' => 'gra', 'Gorai.013G071300' => 'gra', 'GSVIVG01000951001' => 'vvi', 'GSVIVG01003473001' => 'vvi', 'GSVIVG01010991001' => 'vvi', 'GSVIVG01011820001' => 'vvi', 'GSVIVG01011821001' => 'vvi', 'GSVIVG01014591001' => 'vvi', 'GSVIVG01030127001' => 'vvi', 'GSVIVG01030628001' => 'vvi', 'GSVIVG01030742001' => 'vvi', 'GSVIVG01033017001' => 'vvi', 'HanXRQChr04g0126381' => 'han', 'HanXRQChr07g0202731' => 'han', 'HanXRQChr08g0210141' => 'han', 'HanXRQChr08g0213211' => 'han', 'HanXRQChr09g0257381' => 'han', 'HanXRQChr10g0283841' => 'han', 'HanXRQChr10g0297451' => 'han', 'HanXRQChr10g0297461' => 'han', 'HanXRQChr10g0306781' => 'han', 'HanXRQChr11g0329481' => 'han', 'HanXRQChr12g0374051' => 'han', 'HanXRQChr13g0389911' => 'han', 'HanXRQChr13g0405331' => 'han', 'HanXRQChr15g0466171' => 'han', 'HanXRQChr15g0475781' => 'han', 'HanXRQChr17g0551561' => 'han', 'Haze_00667' => 'cav', 'Haze_04831' => 'cav', 'Haze_12472' => 'cav', 'Haze_12585' => 'cav', 'Haze_12902' => 'cav', 'Hma1.2p1_0156F.1_g068850' => 'hma', 'Hma1.2p1_0209F.1_g089000' => 'hma', 'Hma1.2p1_0399F.1_g144130' => 'hma', 'Hma1.2p1_0439F.1_g153160' => 'hma', 'Hma1.2p1_0459F.1_g157250' => 'hma', 'Hma1.2p1_0599F.1_g186950' => 'hma', 'Hma1.2p1_0613F.1_g189220' => 'hma', 'Hma1.2p1_0629F.1_g192140' => 'hma', 'Hma1.2p1_0672F.1_g201080' => 'hma', 'Hma1.2p1_0767F.1_g215410' => 'hma', 'HPP92_006931' => 'vpl', 'HPP92_008835' => 'vpl', 'HPP92_011760' => 'vpl', 'HPP92_017875' => 'vpl', 'HPP92_017876' => 'vpl', 'HPP92_025210' => 'vpl', 'HPP92_025230' => 'vpl', 'HPP92_025276' => 'vpl', 'HPP92_028501' => 'vpl', 'Hund05381' => 'sun', 'Hund12862' => 'sun', 'Hund18077' => 'sun', 'Hund25024' => 'sun', 'Hund25494' => 'sun', 'Hund28219' => 'sun', 'Hund28224' => 'sun', 'Lalb_Chr01g0005531' => 'lal', 'Lalb_Chr04g0252431' => 'lal', 'Lalb_Chr04g0259371' => 'lal', 'Lalb_Chr10g0094181' => 'lal', 'Lalb_Chr10g0094361' => 'lal', 'Lalb_Chr10g0103161' => 'lal', 'Lalb_Chr15g0078751' => 'lal', 'Lalb_Chr17g0344911' => 'lal', 'Lalb_Chr18g0047431' => 'lal', 'Lj1A800G35' => 'lonja', 'Lj1g0005138' => 'lja', 'Lj1g0021723' => 'lja', 'Lj2A1186G33' => 'lonja', 'Lj2A255T56' => 'lonja', 'Lj3C878G6' => 'lonja', 'Lj3g0006324' => 'lja', 'Lj5g0001004' => 'lja', 'Lj6g0007886' => 'lja', 'Lj8C122T16' => 'lonja', 'Lj8C138T2' => 'lonja', 'LjContig00155g0021054' => 'lja', 'Lsat_1_v5_gn_0_37380' => 'lsa', 'Lsat_1_v5_gn_1_63800' => 'lsa', 'Lsat_1_v5_gn_4_68520' => 'lsa', 'Lsat_1_v5_gn_5_122401' => 'lsa', 'Lsat_1_v5_gn_7_97240' => 'lsa', 'Lsat_1_v5_gn_8_146440' => 'lsa', 'Lsat_1_v5_gn_8_42261' => 'lsa', 'Lsat_1_v5_gn_9_102721' => 'lsa', 'Lsat_1_v5_gn_9_4901' => 'lsa', 'Manes.01G214400' => 'mes', 'Manes.05G067300' => 'mes', 'Manes.06G064000' => 'mes', 'Manes.08G103500' => 'mes', 'Manes.09G185700' => 'mes', 'Manes.11G079100' => 'mes', 'Manes.12G066601' => 'mes', 'Manes.13G059800' => 'mes', 'Manes.13G073500' => 'mes', 'Manes.13G073566' => 'mes', 'Manes.13G091300' => 'mes', 'Manes.14G108200' => 'mes', 'MBI02_g18404_MAGBIO' => 'mbi', 'MBI10_g08542_MAGBIO' => 'mbi', 'MBI11_g14283_MAGBIO' => 'mbi', 'MBI14_g33665_MAGBIO' => 'mbi', 'MBI15_g38534_MAGBIO' => 'mbi', 'MBI18_g03306_MAGBIO' => 'mbi', 'MBI18_g37308_MAGBIO' => 'mbi', 'MBI19_g30846_MAGBIO' => 'mbi', 'MCO07G084' => 'mco', 'MD03G1277600' => 'mdo', 'MD09G1104700' => 'mdo', 'MD09G1131800' => 'mdo', 'MD11G1299600' => 'mdo', 'MD13G1034200' => 'mdo', 'MD13G1034400' => 'mdo', 'MD13G1125800' => 'mdo', 'MD16G1035900' => 'mdo', 'MD16G1126400' => 'mdo', 'MD17G1119500' => 'mdo', 'Medtr1g109350' => 'mtr', 'Medtr2g088900' => 'mtr', 'Medtr3g082630' => 'mtr', 'Medtr5g069480' => 'mtr', 'Medtr7g083540' => 'mtr', 'Medtr7g108150' => 'mtr', 'MELO3C012284.2' => 'cme', 'MELO3C017755.2' => 'cme', 'MELO3C019232.2' => 'cme', 'MELO3C024179.2' => 'cme', 'MELO3C025940.2' => 'cme', 'Migut.D00173' => 'egut', 'Migut.E00382' => 'egut', 'Migut.H01218' => 'egut', 'Migut.K01031' => 'egut', 'Migut.M00064' => 'egut', 'Migut.M01461' => 'egut', 'MSTRG.14100' => 'ama', 'MSTRG.14908' => 'ama', 'MSTRG.18186' => 'ama', 'MSTRG.21600' => 'ama', 'MSTRG.2209' => 'ama', 'MSTRG.6622' => 'ama', 'MSTRG.8040' => 'ama', 'Nitab4.5_0000006g0010' => 'nta', 'Nitab4.5_0000006g0530' => 'nta', 'Nitab4.5_0000057g0010' => 'nta', 'Nitab4.5_0000340g0050' => 'nta', 'Nitab4.5_0000780g0020' => 'nta', 'Nitab4.5_0000824g0040' => 'nta', 'Nitab4.5_0001176g0170' => 'nta', 'Nitab4.5_0001176g0180' => 'nta', 'Nitab4.5_0001176g0190' => 'nta', 'Nitab4.5_0001229g0040' => 'nta', 'Nitab4.5_0001302g0080' => 'nta', 'Nitab4.5_0003086g0080' => 'nta', 'Nitab4.5_0003877g0010' => 'nta', 'Nitab4.5_0004941g0040' => 'nta', 'Nitab4.5_0007865g0010' => 'nta', 'Nitab4.5_0008348g0010' => 'nta', 'Nitab4.5_0008379g0020' => 'nta', 'Nitab4.5_0008442g0020' => 'nta', 'Nitab4.5_0009550g0010' => 'nta', 'Nitab4.5_0011858g0010' => 'nta', 'Nn015s41467' => 'nnu', 'Nn1g02048' => 'nnu', 'Nn1g06992' => 'nnu', 'Nn1g07736' => 'nnu', 'Nn1g07737' => 'nnu', 'Nn3g16333' => 'nnu', 'Nn3g16334' => 'nnu', 'Nn3g17414' => 'nnu', 'Nn3g17415' => 'nnu', 'Nn3g17972' => 'nnu', 'Nn3g21307' => 'nnu', 'Nn4g22196' => 'nnu', 'Nn4g23976' => 'nnu', 'Nn4g26014' => 'nnu', 'Nn7g36516' => 'nnu', 'Nn8g40451' => 'nnu', 'Oeu000671.1' => 'oeu', 'Oeu003282.2' => 'oeu', 'Oeu007124.1' => 'oeu', 'Oeu011083.1' => 'oeu', 'Oeu012352.1' => 'oeu', 'Oeu025976.1' => 'oeu', 'Oeu034816.2' => 'oeu', 'Oeu036992.1' => 'oeu', 'Oeu040449.1' => 'oeu', 'Oeu045851.1' => 'oeu', 'Oeu057006.1' => 'oeu', 'Oeu057767.1' => 'oeu', 'Os02g0110100' => 'osa', 'Os02g0724000' => 'osa', 'Os03g0351100' => 'osa', 'Os06g0103000' => 'osa', 'Os06g0298200' => 'osa', 'Os07g0667300' => 'osa', 'Os08g0233300' => 'osa', 'Os08g0536300' => 'osa', 'Os09g0509700' => 'osa', 'Peaxi162Scf00007g01220' => 'pax', 'Peaxi162Scf00012g03214' => 'pax', 'Peaxi162Scf00047g02226' => 'pax', 'Peaxi162Scf00067g01119' => 'pax', 'Peaxi162Scf00128g01749' => 'pax', 'Peaxi162Scf00359g00213' => 'pax', 'Peaxi162Scf00416g00214' => 'pax', 'Peaxi162Scf00564g00613' => 'pax', 'Peaxi162Scf00581g00039' => 'pax', 'PGR031G1987' => 'pgr', 'PGR042G3381' => 'pgr', 'PGR057G0006' => 'pgr', 'PGR083G0349' => 'pgr', 'PGR102G2808' => 'pgr', 'PGR119G1468' => 'pgr', 'PGSC0003DMG400001263' => 'stu', 'PGSC0003DMG400005325' => 'stu', 'PGSC0003DMG400005997' => 'stu', 'PGSC0003DMG400011378' => 'stu', 'PGSC0003DMG400017411' => 'stu', 'PGSC0003DMG400025414' => 'stu', 'PGSC0003DMG400028818' => 'stu', 'Phvul.001G087300' => 'pvu', 'Phvul.001G203000' => 'pvu', 'Phvul.005G113300' => 'pvu', 'Phvul.006G005200' => 'pvu', 'Phvul.007G033100' => 'pvu', 'Phvul.007G166100' => 'pvu', 'Phvul.008G190200' => 'pvu', 'Potri.001G061800' => 'ptr', 'Potri.001G323500' => 'ptr', 'Potri.002G208100' => 'ptr', 'Potri.002G214500' => 'ptr', 'Potri.003G166000' => 'ptr', 'Potri.007G121200' => 'ptr', 'Potri.008G125200' => 'ptr', 'Potri.014G134601' => 'ptr', 'Potri.014G170600' => 'ptr', 'Potri.017G039301' => 'ptr', 'Pp3c14_11960' => 'ppa', 'Pp3c17_6790' => 'ppa', 'Pp3c5_12180' => 'ppa', 'Pp3c6_14410' => 'ppa', 'Prupe.1G219800' => 'ppe', 'Prupe.1G318100' => 'ppe', 'Prupe.1G318400' => 'ppe', 'Prupe.3G194500' => 'ppe', 'Prupe.3G220900' => 'ppe', 'Prupe.8G253900' => 'ppe', 'Psat2g060680' => 'psa', 'Psat3g024360' => 'psa', 'Psat3g094880' => 'psa', 'Psat5g105240' => 'psa', 'Psat5g265480' => 'psa', 'Psat6g223840' => 'psa', 'PSO017G2657' => 'pso', 'PSO017G6731' => 'pso', 'PSO170G1056' => 'pso', 'PSO210G0725' => 'pso', 'PSO478G0738' => 'pso', 'PSO478G2952' => 'pso', 'PSO541G5309' => 'pso', 'PSO541G6065' => 'pso', 'PSO675G4936' => 'pso', 'PSO675G7969' => 'pso', 'QL01p003345' => 'qlo', 'QL02p070168' => 'qlo', 'QL02p070172' => 'qlo', 'QL03p050519' => 'qlo', 'QL04p067001' => 'qlo', 'QL08p033891' => 'qlo', 'QL12p024300' => 'qlo', 'RcHm_v2.0_Chr2g0155581' => 'rch', 'RcHm_v2.0_Chr2g0160151' => 'rch', 'RcHm_v2.0_Chr4g0429371' => 'rch', 'RcHm_v2.0_Chr4g0434181' => 'rch', 'RcHm_v2.0_Chr4g0434191' => 'rch', 'RcHm_v2.0_Chr4g0434201' => 'rch', 'RcHm_v2.0_Chr6g0292831' => 'rch', 'Rhsim04G0031200' => 'rsi', 'Rhsim04G0056700' => 'rsi', 'Rhsim04G0056800' => 'rsi', 'Rhsim06G0157800' => 'rsi', 'Rhsim06G0179000' => 'rsi', 'Rhsim08G0040300' => 'rsi', 'Rhsim09G0076800' => 'rsi', 'Rhsim13G0016400' => 'rsi', 'Sabra02G0149900' => 'sbr', 'Sabra03G0121400' => 'sbr', 'Sabra07G0098200' => 'sbr', 'Sabra08G0094600' => 'sbr', 'Sabra14G0100300' => 'sbr', 'Sabra14G0130000' => 'sbr', 'Sabra16G0206200' => 'sbr', 'Sabra17G0026300' => 'sbr', 'SalBow1G3130' => 'sbo', 'SalBow2G0626' => 'sbo', 'SalBow2G1823' => 'sbo', 'SalBow7G2376' => 'sbo', 'SalBow8G0758' => 'sbo', 'SalBow8G1395' => 'sbo', 'SalBow8G3360' => 'sbo', 'SalBow8G3524' => 'sbo', 'Sc06g0009400' => 'sci', 'Sc06g0009960' => 'sci', 'Sc14g0009210' => 'sci', 'Sc21g0000410' => 'sci', 'Sc24g0003950' => 'sci', 'Sed0003572' => 'sed', 'Sed0003785' => 'sed', 'Sed0005852' => 'sed', 'Sed0007287' => 'sed', 'Sed0007319' => 'sed', 'Sed0008167' => 'sed', 'Sed0013279' => 'sed', 'Sed0016954' => 'sed', 'Sed0018987' => 'sed', 'SEGI_03088' => 'sgi', 'SEGI_07482' => 'sgi', 'SEGI_07563' => 'sgi', 'SEGI_07789' => 'sgi', 'SGA_v2.0_scaffold159G37582' => 'sas', 'SGA_v2.0_scaffold170G38813' => 'sas', 'SGA_v2.0_scaffold181G39699' => 'sas', 'SGA_v2.0_scaffold186G40140' => 'sas', 'SGA_v2.0_scaffold1G00417' => 'sas', 'SGA_v2.0_scaffold1G00673' => 'sas', 'SGA_v2.0_scaffold49G18395' => 'sas', 'SGA_v2.0_scaffold540G52798' => 'sas', 'SGA_v2.0_scaffold73G24485' => 'sas', 'SGA_v2.0_scaffold9G04797' => 'sas', 'SMO164G0091' => 'smo', 'Solyc04g007470.3' => 'sly', 'Solyc05g020020.4' => 'sly', 'Solyc05g024010.3' => 'sly', 'Solyc05g046040.2' => 'sly', 'Solyc07g045180.4' => 'sly', 'Solyc09g074560.3' => 'sly', 'Solyc12g006240.2' => 'sly', 'Sopen04g002550' => 'spe', 'Sopen05g017100' => 'spe', 'Sopen05g018710' => 'spe', 'Sopen05g027290' => 'spe', 'Sopen07g023730' => 'spe', 'Sopen09g029390' => 'spe', 'Sopen12g002190' => 'spe', 'Sp1g24230' => 'spa', 'Sp2g18620' => 'spa', 'Sp3g06590' => 'spa', 'Sp3g19850' => 'spa', 'Sp4g29800' => 'spa', 'Sp5g23200' => 'spa', 'Sp7g13470' => 'spa', 'TAR371G0296' => 'tar', 'TAR371G0423' => 'tar', 'TAR371G1165' => 'tar', 'TAR622G0905' => 'tar', 'TAR624G0679' => 'tar', 'TAR624G0817' => 'tar', 'TAR626G0596' => 'tar', 'TAR627G0827' => 'tar', 'TAR627G0834' => 'tar', 'TAR629G1754' => 'tar', 'TAR629G2218' => 'tar', 'TAR629G2853' => 'tar', 'TAR629G3252' => 'tar', 'TAR636G1228' => 'tar', 'THA.LOC104802633' => 'tha', 'THA.LOC104808123' => 'tha', 'THA.LOC104814201' => 'tha', 'THA.LOC104815371' => 'tha', 'THA.LOC104819028' => 'tha', 'THA.LOC104820467' => 'tha', 'THA.LOC104823059' => 'tha', 'Thecc.01G199600' => 'tca', 'Thecc.01G292100' => 'tca', 'Thecc.02G162700' => 'tca', 'Thecc.02G196800' => 'tca', 'Thecc.02G219600' => 'tca', 'Thecc.04G043800' => 'tca', 'Thhalv10001548m.g' => 'esa', 'Thhalv10004423m.g' => 'esa', 'Thhalv10007673m.g' => 'esa', 'Thhalv10018809m.g' => 'esa', 'Thhalv10020880m.g' => 'esa', 'Thhalv10020967m.g' => 'esa', 'Thhalv10025713m.g' => 'esa', 'TPR.G13847' => 'tpr', 'TPR.G27468' => 'tpr', 'TPR.G32301' => 'tpr', 'TPR.G4147' => 'tpr', 'TPR.G4924' => 'tpr', 'TPR.G5748' => 'tpr', 'TPR.G7251' => 'tpr', 'TPR.G9086' => 'tpr', 'TWI14G0931' => 'twi', 'TWI18G0203' => 'twi', 'TWI18G0317' => 'twi', 'TWI23G0773' => 'twi', 'TWI31G0568' => 'twi', 'TWI36G1265' => 'twi', 'TWI36G1693' => 'twi', 'TWI59G0050' => 'twi', 'TWI75G0886' => 'twi', 'TWI75G0998' => 'twi', 'unitig_0.g647' => 'ugi', 'unitig_22.g5579' => 'ugi', 'unitig_22.g6384' => 'ugi', 'unitig_24.g30587' => 'ugi', 'unitig_37.g12169' => 'ugi', 'unitig_52.g17317' => 'ugi', 'unitig_62.g23254' => 'ugi', 'unitig_8.g3122' => 'ugi', 'unitig_92.g28101' => 'ugi', 'vmacro02501' => 'vma', 'vmacro09323' => 'vma', 'vmacro09467' => 'vma', 'vmacro12062' => 'vma', 'vmacro12230' => 'vma', 'vmacro16083' => 'vma', 'vmacro18370' => 'vma', 'VMungo0540G1995' => 'vmu', 'VMungo0647G2098' => 'vmu', 'VMungo0720G0641' => 'vmu', 'VMungo0720G2328' => 'vmu', 'VMungo1080G1019' => 'vmu', 'VMungo1383G1467' => 'vmu', 'VMungo1383G2810' => 'vmu', 'Zm00001eb016800' => 'zma', 'Zm00001eb036970' => 'zma', 'Zm00001eb110960' => 'zma', 'Zm00001eb189080' => 'zma', 'Zm00001eb253150' => 'zma', 'Zm00001eb330070' => 'zma', 'Zm00001eb379680' => 'zma', 'Zm00001eb380990' => 'zma' ) $gf_id = 'HOM05D000707' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000707' ) $data_identifier = 'HOM05D000707' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 10, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 7, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 12, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 20, 'nnu' => (int) 16, 'oeu' => (int) 12, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 10, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 14, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb380990' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1